- Predicted Gene MLOC_52566
MLOC_52566 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52566_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52566_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.52767 | 0.994106 | 0 | 1.60836 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.510527 | 2.36636 | 0 | 1.694 |
INF1 | Young developing inflorescences (5mm) | 0 | 1.6674 | 1.22534 | 1.50002 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.37621 | 1.00998 | 2.11309 | 2.03506 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.75166 | 0.823909 | 2.37364 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.0610234 | 0.385311 | 0.69214 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.54379 | 1.75002 | 1.15462 | 2.07227 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.410307 | 0.954396 | 0 | 2.77845 |
CDS Structure of MLOC_52566
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52566.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g12710.1 |
+1 |
2e-22 |
91 |
40/45 (89%) |
13107.m01319 protein GIY-YIG catalytic domain containing protein, putative, expressed |
TAIR PP10 |
AT2G30350.2 |
+1 |
2e-19 |
81 |
36/45 (80%) |
Excinuclease ABC, C subunit, N-terminal | chr2:12934237-12935742 REVERSE LENGTH=368 |