MLOC_52566 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.527670.99410601.60836
LEAShoots from the seedlings (10 cm shoot stage)0.5105272.3663601.694
INF1Young developing inflorescences (5mm)01.66741.225341.50002
INF2Developing inflorescences (1-1.5 cm)1.376211.009982.113092.03506
ROORoots from the seedlings (10 cm shoot stage)00.751660.8239092.37364
NODDeveloping tillers at six leaf stage, 3rd internode00.06102340.3853110.69214
CAR5Developing grain, bracts removed (5 DPA)1.543791.750021.154622.07227
CAR15Developing grain, bracts removed (15 DPA)0.4103070.95439602.77845



CDS Structure of MLOC_52566






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52566.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52566.1CUST_7418_PI427708083AvailableAvailablecontig_376260 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g12710.1 +1 2e-22 91 40/45 (89%) 13107.m01319 protein GIY-YIG catalytic domain containing protein, putative, expressed
TAIR PP10 AT2G30350.2 +1 2e-19 81 36/45 (80%) Excinuclease ABC, C subunit, N-terminal | chr2:12934237-12935742 REVERSE LENGTH=368