- Predicted Gene MLOC_52550
MLOC_52550 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52550_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52550_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 42.5825 | 40.9676 | 83.3779 | 51.9708 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 175.814 | 47.2775 | 98.3804 | 96.8097 |
INF1 | Young developing inflorescences (5mm) | 0.347662 | 0.287546 | 0.435476 | 0.295512 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.437022 | 0.203653 | 0.292682 | 0.333839 |
ROO | Roots from the seedlings (10 cm shoot stage) | 10.1951 | 29.06 | 67.9896 | 36.8152 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.15986 | 1.04485 | 0.201442 | 3.03852 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.4055 | 3.95626 | 4.00523 | 3.58418 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.263346 | 0.235831 | 0.220979 | 0.583082 |
CDS Structure of MLOC_52550
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52550.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g13660.1 |
-1 |
2e-52 |
179 |
95/122 (78%) |
13102.m01519 protein meiosis 5, putative, expressed |
TAIR PP10 |
AT2G42840.1 |
-1 |
4e-21 |
94 |
56/110 (51%) |
| Symbols: PDF1 | protodermal factor 1 | chr2:17826327-17827426 REVERSE LENGTH=306 |