MLOC_52550 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.582540.967683.377951.9708
LEAShoots from the seedlings (10 cm shoot stage)175.81447.277598.380496.8097
INF1Young developing inflorescences (5mm)0.3476620.2875460.4354760.295512
INF2Developing inflorescences (1-1.5 cm)0.4370220.2036530.2926820.333839
ROORoots from the seedlings (10 cm shoot stage)10.195129.0667.989636.8152
NODDeveloping tillers at six leaf stage, 3rd internode2.159861.044850.2014423.03852
CAR5Developing grain, bracts removed (5 DPA)3.40553.956264.005233.58418
CAR15Developing grain, bracts removed (15 DPA)0.2633460.2358310.2209790.583082



CDS Structure of MLOC_52550






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52550.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360744NoneNoneNoneNone
MLOC_52550.1CUST_2984_PI427708080AvailableAvailablecontig_37611 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13660.1 -1 2e-52 179 95/122 (78%) 13102.m01519 protein meiosis 5, putative, expressed
TAIR PP10 AT2G42840.1 -1 4e-21 94 56/110 (51%) | Symbols: PDF1 | protodermal factor 1 | chr2:17826327-17827426 REVERSE LENGTH=306