MLOC_52549 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.304914.642245.29025.43827
LEAShoots from the seedlings (10 cm shoot stage)2.879572.291614.528622.58548
INF1Young developing inflorescences (5mm)1.292281.828612.609641.64688
INF2Developing inflorescences (1-1.5 cm)1.898551.986321.817052.16453
ROORoots from the seedlings (10 cm shoot stage)14.29017.194136.7988.8469
NODDeveloping tillers at six leaf stage, 3rd internode4.28064.8367.2587914.3971
CAR5Developing grain, bracts removed (5 DPA)4.740724.576183.811974.28232
CAR15Developing grain, bracts removed (15 DPA)0.95480.8868090.9186742.26669



CDS Structure of MLOC_52549






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52549.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372437NoneNoneNoneNone
MLOC_52549.1CUST_2983_PI427708080AvailableAvailablecontig_37611 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13650.1 +2 1e-170 499 251/298 (84%) 13102.m01517 protein expressed protein
TAIR PP10 AT3G58800.1 +2 3e-81 266 143/291 (49%) unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21748562-21749596 FORWARD LENGTH=344