- Predicted Gene MLOC_52549
MLOC_52549 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52549_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52549_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 7.30491 | 4.64224 | 5.2902 | 5.43827 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.87957 | 2.29161 | 4.52862 | 2.58548 |
INF1 | Young developing inflorescences (5mm) | 1.29228 | 1.82861 | 2.60964 | 1.64688 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.89855 | 1.98632 | 1.81705 | 2.16453 |
ROO | Roots from the seedlings (10 cm shoot stage) | 14.2901 | 7.19413 | 6.798 | 8.8469 |
NOD | Developing tillers at six leaf stage, 3rd internode | 4.2806 | 4.836 | 7.25879 | 14.3971 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.74072 | 4.57618 | 3.81197 | 4.28232 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.9548 | 0.886809 | 0.918674 | 2.26669 |
CDS Structure of MLOC_52549
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52549.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g13650.1 |
+2 |
1e-170 |
499 |
251/298 (84%) |
13102.m01517 protein expressed protein |
TAIR PP10 |
AT3G58800.1 |
+2 |
3e-81 |
266 |
143/291 (49%) |
unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21748562-21749596 FORWARD LENGTH=344 |