MLOC_52548 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.4167215.88729.7423710.5599
LEAShoots from the seedlings (10 cm shoot stage)8.133527.134348.350796.22092
INF1Young developing inflorescences (5mm)13.563815.637113.08712.3202
INF2Developing inflorescences (1-1.5 cm)15.939117.768911.992918.2068
ROORoots from the seedlings (10 cm shoot stage)4.8681811.03716.2261510.6255
NODDeveloping tillers at six leaf stage, 3rd internode2.351114.7173.167412.266
CAR5Developing grain, bracts removed (5 DPA)12.744811.03749.5759711.4884
CAR15Developing grain, bracts removed (15 DPA)4.071252.860533.555078.75657



CDS Structure of MLOC_52548






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52548.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52548.1CUST_12941_PI427708080AvailableAvailablecontig_37611 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g04220.1 +3 9e-109 350 175/207 (85%) 13111.m00370 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT2G26780.1 +3 2e-66 228 114/206 (55%) ARM repeat superfamily protein | chr2:11410125-11423598 FORWARD LENGTH=1826