- Predicted Gene MLOC_52548
MLOC_52548 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 1.41672 | 15.8872 | 9.74237 | 10.5599 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 8.13352 | 7.13434 | 8.35079 | 6.22092 |
| INF1 | Young developing inflorescences (5mm) | 13.5638 | 15.6371 | 13.087 | 12.3202 |
| INF2 | Developing inflorescences (1-1.5 cm) | 15.9391 | 17.7689 | 11.9929 | 18.2068 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 4.86818 | 11.0371 | 6.22615 | 10.6255 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 2.35111 | 4.717 | 3.1674 | 12.266 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 12.7448 | 11.0374 | 9.57597 | 11.4884 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.07125 | 2.86053 | 3.55507 | 8.75657 |
CDS Structure of MLOC_52548
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52548.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os11g04220.1 |
+3 |
9e-109 |
350 |
175/207 (85%) |
13111.m00370 protein HEAT repeat family protein, putative, expressed |
| TAIR PP10 |
AT2G26780.1 |
+3 |
2e-66 |
228 |
114/206 (55%) |
ARM repeat superfamily protein | chr2:11410125-11423598 FORWARD LENGTH=1826 |