MLOC_5253 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.422026.131545.936836.54294
LEAShoots from the seedlings (10 cm shoot stage)6.723712.531232.144673.72255
INF1Young developing inflorescences (5mm)26.580525.141322.462623.7835
INF2Developing inflorescences (1-1.5 cm)42.938438.391436.568949.4326
ROORoots from the seedlings (10 cm shoot stage)2.434454.54913.733136.68569
NODDeveloping tillers at six leaf stage, 3rd internode10.718810.667711.742347.691
CAR5Developing grain, bracts removed (5 DPA)15.721713.870915.575517.1067
CAR15Developing grain, bracts removed (15 DPA)4.512594.594994.9179311.9027



CDS Structure of MLOC_5253






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5253.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5253.1CUST_12938_PI427708080AvailableAvailablecontig_136060 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g06910.2 +3 0.0 1135 646/900 (72%) 13111.m00703 protein myosin heavy chain-related, putative, expressed
TAIR PP10 AT1G77580.2 +3 8e-95 323 262/781 (34%) Plant protein of unknown function (DUF869) | chr1:29144191-29146793 REVERSE LENGTH=779