- Predicted Gene MLOC_52525
MLOC_52525 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52525_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52525_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.08699 | 0.941592 | 0.870046 | 0.991568 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.00549 | 0.231092 | 0.138751 | 0.417169 |
INF1 | Young developing inflorescences (5mm) | 3.19057 | 3.86433 | 3.81946 | 3.08248 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.00121 | 3.0164 | 2.76267 | 3.24343 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.413614 | 1.16865 | 0.760803 | 1.26138 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.00463779 | 0.0407492 | 0.0563277 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.3452 | 1.38725 | 1.52452 | 1.36704 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.385146 | 0.502178 | 0.409348 | 1.01121 |
CDS Structure of MLOC_52525
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52525.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g19260.1 |
+3 |
0.0 |
1056 |
520/671 (77%) |
13112.m02046 protein tetratricopeptide-like helical, putative, expressed |
TAIR PP10 |
AT4G02750.1 |
+3 |
2e-164 |
503 |
250/585 (43%) |
Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781 |