MLOC_52525 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.086990.9415920.8700460.991568
LEAShoots from the seedlings (10 cm shoot stage)1.005490.2310920.1387510.417169
INF1Young developing inflorescences (5mm)3.190573.864333.819463.08248
INF2Developing inflorescences (1-1.5 cm)3.001213.01642.762673.24343
ROORoots from the seedlings (10 cm shoot stage)0.4136141.168650.7608031.26138
NODDeveloping tillers at six leaf stage, 3rd internode00.004637790.04074920.0563277
CAR5Developing grain, bracts removed (5 DPA)1.34521.387251.524521.36704
CAR15Developing grain, bracts removed (15 DPA)0.3851460.5021780.4093481.01121



CDS Structure of MLOC_52525






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52525.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52525.1CUST_12937_PI427708080AvailableAvailablecontig_37590 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g19260.1 +3 0.0 1056 520/671 (77%) 13112.m02046 protein tetratricopeptide-like helical, putative, expressed
TAIR PP10 AT4G02750.1 +3 2e-164 503 250/585 (43%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781