MLOC_52485 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.876247.536338.005057.47819
LEAShoots from the seedlings (10 cm shoot stage)8.260594.210285.635195.1552
INF1Young developing inflorescences (5mm)4.693555.39455.775144.54128
INF2Developing inflorescences (1-1.5 cm)4.725335.490764.785015.61779
ROORoots from the seedlings (10 cm shoot stage)9.783779.710617.8823711.1553
NODDeveloping tillers at six leaf stage, 3rd internode9.524759.755556.411929.575
CAR5Developing grain, bracts removed (5 DPA)34.220531.175536.522733.1776
CAR15Developing grain, bracts removed (15 DPA)5.332774.531084.2242511.299



CDS Structure of MLOC_52485






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52485.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356789NoneNoneNoneNone
MLOC_52485.4CUST_2975_PI427708080AvailableAvailablecontig_37557 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48370.1 +1 0.0 561 302/423 (71%) 13105.m05144 protein expressed protein
TAIR PP10 AT4G21700.1 +1 6e-84 289 209/693 (30%) Protein of unknown function (DUF2921) | chr4:11529956-11532844 FORWARD LENGTH=962