- Predicted Gene MLOC_52485
MLOC_52485 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52485_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52485_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 6.87624 | 7.53633 | 8.00505 | 7.47819 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 8.26059 | 4.21028 | 5.63519 | 5.1552 |
INF1 | Young developing inflorescences (5mm) | 4.69355 | 5.3945 | 5.77514 | 4.54128 |
INF2 | Developing inflorescences (1-1.5 cm) | 4.72533 | 5.49076 | 4.78501 | 5.61779 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.78377 | 9.71061 | 7.88237 | 11.1553 |
NOD | Developing tillers at six leaf stage, 3rd internode | 9.52475 | 9.75555 | 6.4119 | 29.575 |
CAR5 | Developing grain, bracts removed (5 DPA) | 34.2205 | 31.1755 | 36.5227 | 33.1776 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.33277 | 4.53108 | 4.22425 | 11.299 |
CDS Structure of MLOC_52485
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52485.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g48370.1 |
+1 |
0.0 |
561 |
302/423 (71%) |
13105.m05144 protein expressed protein |
TAIR PP10 |
AT4G21700.1 |
+1 |
6e-84 |
289 |
209/693 (30%) |
Protein of unknown function (DUF2921) | chr4:11529956-11532844 FORWARD LENGTH=962 |