MLOC_52480 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.26503100
LEAShoots from the seedlings (10 cm shoot stage)000.4238820
INF1Young developing inflorescences (5mm)0.4854550.5072320.6075260
INF2Developing inflorescences (1-1.5 cm)0.5889050.3712740.775440
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.3949541.099080
CAR5Developing grain, bracts removed (5 DPA)00.2270620.5413450
CAR15Developing grain, bracts removed (15 DPA)0.25732100.3807050



CDS Structure of MLOC_52480






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK372862
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372862CUST_14356_PI427708083NoneNoneNone
MLOC_29611.1NoneAvailableNonecontig_2020713 (Not mapped)
MLOC_30431.1NoneAvailableNonecontig_2095647 (Not mapped)
MLOC_30527.1NoneAvailableNonecontig_2105647 (Mapped)
MLOC_31780.1NoneAvailableNonecontig_2222271 (Mapped)
MLOC_32576.1NoneAvailableAvailablecontig_2299007 (Not mapped)
MLOC_35689.1NoneAvailableNonecontig_2516535 (Not mapped)
MLOC_45842.1NoneAvailableNonecontig_281990 (Mapped)
MLOC_52480.1NoneAvailableNonecontig_375520 (Mapped)
MLOC_52824.1NoneAvailableNonecontig_378265 (Not mapped)
MLOC_7652.1NoneAvailableNonecontig_1397669 (Not mapped)
MLOC_9067.1NoneAvailableNonecontig_1488308 (Not mapped)
MLOC_9725.1NoneAvailableNonecontig_155128 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10None-----