MLOC_52439 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.502294.136873.6764.04568
LEAShoots from the seedlings (10 cm shoot stage)11.072514.20365.998339.34727
INF1Young developing inflorescences (5mm)24.677818.899326.906820.0611
INF2Developing inflorescences (1-1.5 cm)39.578956.556451.850754.6759
ROORoots from the seedlings (10 cm shoot stage)16.279537.571131.27245.4527
NODDeveloping tillers at six leaf stage, 3rd internode26.612625.282710.554484.0162
CAR5Developing grain, bracts removed (5 DPA)18.529817.869221.429519.1084
CAR15Developing grain, bracts removed (15 DPA)40.638445.986943.198998.0376



CDS Structure of MLOC_52439






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52439.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250773.1NoneNoneNoneNone
MLOC_52439.6CUST_2968_PI427708080AvailableAvailablecontig_37530 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37970.1 -1 8e-131 387 195/242 (81%) 13112.m03911 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT5G59780.3 -1 6e-77 246 138/231 (60%) | Symbols: MYB59, ATMYB59-3 | myb domain protein 59 | chr5:24082425-24083350 REVERSE LENGTH=235