MLOC_52430 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.623692.901473.009512.88109
LEAShoots from the seedlings (10 cm shoot stage)11.867111.963912.17189.43731
INF1Young developing inflorescences (5mm)3.062644.072423.627182.64515
INF2Developing inflorescences (1-1.5 cm)3.721633.215365.236583.76519
ROORoots from the seedlings (10 cm shoot stage)3.441134.381875.028134.5948
NODDeveloping tillers at six leaf stage, 3rd internode6.262797.793477.9207423.2897
CAR5Developing grain, bracts removed (5 DPA)5.079885.100444.915944.25834
CAR15Developing grain, bracts removed (15 DPA)5.105933.900495.023389.21116



CDS Structure of MLOC_52430






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52430.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52430.1CUST_7402_PI427708083AvailableAvailablecontig_37526 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g38870.2 +1 1e-47 162 92/157 (59%) 13111.m03824 protein helix-loop-helix DNA-binding domain containing protein, expressed
TAIR PP10None-----