MLOC_52423 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.799116.070846.216665.24709
LEAShoots from the seedlings (10 cm shoot stage)10.43036.116052.684555.43166
INF1Young developing inflorescences (5mm)15.506113.047916.490411.2284
INF2Developing inflorescences (1-1.5 cm)32.563332.774833.114832.2989
ROORoots from the seedlings (10 cm shoot stage)5.70287.614918.338198.04587
NODDeveloping tillers at six leaf stage, 3rd internode3.846715.439698.5643618.4224
CAR5Developing grain, bracts removed (5 DPA)17.910522.68918.699716.9322
CAR15Developing grain, bracts removed (15 DPA)11.897710.350811.752822.5894



CDS Structure of MLOC_52423






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52423.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52423.3CUST_12711_PI427708083AvailableAvailablecontig_375201 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15310.3 -1 6e-27 102 47/58 (81%) 13102.m01709 protein RNA recognition motif containing protein, expressed
TAIR PP10 AT3G55460.1 -1 1e-18 80 38/55 (69%) | Symbols: SCL30, At-SCL30 | SC35-like splicing factor 30 | chr3:20561024-20563502 FORWARD LENGTH=262