MLOC_52403 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains50.735737.593238.568139.3364
LEAShoots from the seedlings (10 cm shoot stage)40.107526.170938.777226.637
INF1Young developing inflorescences (5mm)12.008515.723315.75912.0162
INF2Developing inflorescences (1-1.5 cm)14.416516.07814.339915.9739
ROORoots from the seedlings (10 cm shoot stage)102.43346.001938.632455.8615
NODDeveloping tillers at six leaf stage, 3rd internode55.1667102.16494.3699255.329
CAR5Developing grain, bracts removed (5 DPA)11.9213.496210.333911.2865
CAR15Developing grain, bracts removed (15 DPA)0.890510.8588340.6011381.9715



CDS Structure of MLOC_52403






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52403.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251117.1NoneNoneNoneNone
MLOC_52403.1CUST_2964_PI427708080AvailableAvailablecontig_37511 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g07780.1 -2 5e-126 369 193/221 (87%) 13106.m00810 protein vesicle-associated membrane protein, putative, expressed
TAIR PP10 AT4G32150.1 -2 2e-98 297 155/220 (70%) | Symbols: VAMP711, ATVAMP711 | vesicle-associated membrane protein 711 | chr4:15526407-15527651 REVERSE LENGTH=219