MLOC_52380 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains93.888266.454464.205373.6394
LEAShoots from the seedlings (10 cm shoot stage)36.44326.8903110.546713.9982
INF1Young developing inflorescences (5mm)179.128186.674180.522169.006
INF2Developing inflorescences (1-1.5 cm)138.45161.308138.978172.725
ROORoots from the seedlings (10 cm shoot stage)52.521151.355956.995655.2236
NODDeveloping tillers at six leaf stage, 3rd internode2.79144.202661.265757.82708
CAR5Developing grain, bracts removed (5 DPA)67.645569.933565.636169.3256
CAR15Developing grain, bracts removed (15 DPA)26.27922.790226.882765.9296



CDS Structure of MLOC_52380






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52380.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360538NoneNoneNoneNone
MLOC_52380.1CUST_265_PI427708083AvailableAvailablecontig_37489 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g43690.1 +1 8e-40 146 63/90 (70%) 13105.m04605 protein glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed
TAIR PP10 AT1G18650.1 +1 2e-25 103 44/89 (49%) | Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184