- Predicted Gene MLOC_52380
MLOC_52380 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 93.8882 | 66.4544 | 64.2053 | 73.6394 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 36.4432 | 6.89031 | 10.5467 | 13.9982 |
INF1 | Young developing inflorescences (5mm) | 179.128 | 186.674 | 180.522 | 169.006 |
INF2 | Developing inflorescences (1-1.5 cm) | 138.45 | 161.308 | 138.978 | 172.725 |
ROO | Roots from the seedlings (10 cm shoot stage) | 52.5211 | 51.3559 | 56.9956 | 55.2236 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.7914 | 4.20266 | 1.26575 | 7.82708 |
CAR5 | Developing grain, bracts removed (5 DPA) | 67.6455 | 69.9335 | 65.6361 | 69.3256 |
CAR15 | Developing grain, bracts removed (15 DPA) | 26.279 | 22.7902 | 26.8827 | 65.9296 |
CDS Structure of MLOC_52380
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52380.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g43690.1 |
+1 |
8e-40 |
146 |
63/90 (70%) |
13105.m04605 protein glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed |
TAIR PP10 |
AT1G18650.1 |
+1 |
2e-25 |
103 |
44/89 (49%) |
| Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184 |