MLOC_52316 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.1980610.30839.1054610.6334
LEAShoots from the seedlings (10 cm shoot stage)12.99686.208126.756237.20393
INF1Young developing inflorescences (5mm)27.722425.834123.632624.1598
INF2Developing inflorescences (1-1.5 cm)57.152351.769254.418765.751
ROORoots from the seedlings (10 cm shoot stage)2.323585.870064.72946.66341
NODDeveloping tillers at six leaf stage, 3rd internode1.597913.230041.841568.09748
CAR5Developing grain, bracts removed (5 DPA)29.024126.575828.290130.4449
CAR15Developing grain, bracts removed (15 DPA)3.16532.014124.010157.66363



CDS Structure of MLOC_52316






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52316.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249246.1NoneNoneNoneNone
MLOC_52316.1CUST_2955_PI427708080AvailableAvailablecontig_37438 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g04190.1 +3 0.0 1117 621/777 (80%) 13108.m00392 protein homeobox and START domains containing protein, putative, expressed
TAIR PP10 AT4G21750.2 +3 0.0 903 483/708 (68%) | Symbols: ATML1 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:11556965-11560243 FORWARD LENGTH=762