- Predicted Gene MLOC_52280
MLOC_52280 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 11.6858 | 16.4957 | 15.4427 | 16.7562 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 20.2209 | 17.6603 | 19.9441 | 17.6396 |
| INF1 | Young developing inflorescences (5mm) | 38.3193 | 41.9871 | 46.7264 | 38.9917 |
| INF2 | Developing inflorescences (1-1.5 cm) | 59.4851 | 59.6749 | 55.0038 | 68.8247 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 13.1183 | 14.7748 | 13.1892 | 19.6969 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 7.99101 | 11.085 | 16.6369 | 42.9944 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 14.482 | 14.3285 | 12.512 | 14.8839 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.42299 | 4.45883 | 4.71275 | 11.4709 |
CDS Structure of MLOC_52280
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52280.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g56140.1 |
+2 |
0.0 |
551 |
352/634 (56%) |
13104.m05837 protein expressed protein |
| TAIR PP10 |
AT4G31430.3 |
+2 |
3e-16 |
83 |
88/304 (29%) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:15248510-15251945 FORWARD LENGTH=485 |