MLOC_52280 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.685816.495715.442716.7562
LEAShoots from the seedlings (10 cm shoot stage)20.220917.660319.944117.6396
INF1Young developing inflorescences (5mm)38.319341.987146.726438.9917
INF2Developing inflorescences (1-1.5 cm)59.485159.674955.003868.8247
ROORoots from the seedlings (10 cm shoot stage)13.118314.774813.189219.6969
NODDeveloping tillers at six leaf stage, 3rd internode7.9910111.08516.636942.9944
CAR5Developing grain, bracts removed (5 DPA)14.48214.328512.51214.8839
CAR15Developing grain, bracts removed (15 DPA)4.422994.458834.7127511.4709



CDS Structure of MLOC_52280






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52280.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356421NoneNoneNoneNone
MLOC_52280.1CUST_2949_PI427708080AvailableAvailablecontig_37414 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g56140.1 +2 0.0 551 352/634 (56%) 13104.m05837 protein expressed protein
TAIR PP10 AT4G31430.3 +2 3e-16 83 88/304 (29%) unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:15248510-15251945 FORWARD LENGTH=485