MLOC_52278 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains80.64270.842557.698365.9597
LEAShoots from the seedlings (10 cm shoot stage)23.368520.084421.60416.1997
INF1Young developing inflorescences (5mm)64.301952.159241.204643.9639
INF2Developing inflorescences (1-1.5 cm)25.160228.700127.029229.8067
ROORoots from the seedlings (10 cm shoot stage)47.527759.172160.913959.636
NODDeveloping tillers at six leaf stage, 3rd internode0.5715310.4936630.8727791.44505
CAR5Developing grain, bracts removed (5 DPA)35.691836.387838.910836.6794
CAR15Developing grain, bracts removed (15 DPA)7.97749.747995.9822320.232



CDS Structure of MLOC_52278






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52278.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250933.1NoneNoneNoneNone
MLOC_52278.1CUST_18080_PI427708080AvailableAvailablecontig_37411 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39780.2 -2 1e-91 277 145/176 (82%) 13109.m04000 protein peptidyl-prolyl cis-trans isomerase, putative, expressed
TAIR PP10 AT3G56070.2 -2 2e-82 253 134/169 (79%) | Symbols: ROC2 | rotamase cyclophilin 2 | chr3:20806987-20807517 REVERSE LENGTH=176