MLOC_52277 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.95398.302387.3171714.2286
LEAShoots from the seedlings (10 cm shoot stage)5.283233.09172.211492.58694
INF1Young developing inflorescences (5mm)1.565632.150370.961472.08227
INF2Developing inflorescences (1-1.5 cm)0.2171211.478762.066612.35523
ROORoots from the seedlings (10 cm shoot stage)9.4926219.586410.469319.3292
NODDeveloping tillers at six leaf stage, 3rd internode20.269918.56896.9321534.5886
CAR5Developing grain, bracts removed (5 DPA)13.952410.405110.972515.1386
CAR15Developing grain, bracts removed (15 DPA)1.08011.541491.6883.90856



CDS Structure of MLOC_52277






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52277.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372125NoneNoneNoneNone
MLOC_52277.1CUST_551_PI427708083AvailableAvailablecontig_37411 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42880.1 +2 2e-77 246 115/136 (85%) 13101.m04415 protein transferase family protein, putative, expressed
TAIR PP10 AT3G62160.1 +2 1e-20 92 46/128 (36%) HXXXD-type acyl-transferase family protein | chr3:23014333-23015808 REVERSE LENGTH=428