MLOC_52276 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.750161.397711.280771.13068
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.2313520.1421050.4091060.202844
INF2Developing inflorescences (1-1.5 cm)0.1616350.187460.2714660.195208
ROORoots from the seedlings (10 cm shoot stage)0.897861.095050.7960471.22274
NODDeveloping tillers at six leaf stage, 3rd internode0.04196930.04221340.01441010.122139
CAR5Developing grain, bracts removed (5 DPA)00.08706630.05333820.0668328
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_52276






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52276.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52276.7CUST_12895_PI427708080AvailableAvailablecontig_37411 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44940.1 +3 6e-55 184 111/187 (59%) 13108.m04900 protein DUF260 domain containing protein, putative, expressed
TAIR PP10 AT2G42440.1 +3 4e-46 161 88/121 (73%) Lateral organ boundaries (LOB) domain family protein | chr2:17668888-17669750 REVERSE LENGTH=244