MLOC_52273 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.078112.703413.665732.68012
LEAShoots from the seedlings (10 cm shoot stage)5.563176.473836.53184.76995
INF1Young developing inflorescences (5mm)5.338525.574096.476624.165
INF2Developing inflorescences (1-1.5 cm)6.267277.831346.131636.64091
ROORoots from the seedlings (10 cm shoot stage)5.907744.317253.452024.87313
NODDeveloping tillers at six leaf stage, 3rd internode1.34061.973652.191116.06741
CAR5Developing grain, bracts removed (5 DPA)4.281794.791774.444563.84573
CAR15Developing grain, bracts removed (15 DPA)2.229852.241321.820234.20352



CDS Structure of MLOC_52273






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52273.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52273.3CUST_12894_PI427708080AvailableAvailablecontig_37411 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39790.1 +3 0.0 523 280/365 (77%) 13109.m04001 protein lipase, putative, expressed
TAIR PP10 AT2G42450.1 +3 1e-127 382 193/339 (57%) alpha/beta-Hydrolases superfamily protein | chr2:17672425-17674854 REVERSE LENGTH=546