- Predicted Gene MLOC_52270
MLOC_52270 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0 | 0 | 0 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
INF1 | Young developing inflorescences (5mm) | 0.0306231 | 0 | 0 | 0.0277021 |
INF2 | Developing inflorescences (1-1.5 cm) | 0 | 0 | 0 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 0.104162 | 0.0587327 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.00699921 | 0 | 0.0674086 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.15216 | 1.45974 | 1.85225 | 1.85984 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0 | 0 | 0.0399656 | 0.101672 |
CDS Structure of MLOC_52270
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52270.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g56995.1 |
+3 |
8e-24 |
97 |
68/113 (60%) |
13104.m11834 protein expressed protein |
TAIR PP10 |
AT2G42180.1 |
+3 |
4e-13 |
67 |
35/66 (53%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17581133-17581633 REVERSE LENGTH=166 |