MLOC_52270 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.0306231000.0277021
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)000.1041620.0587327
NODDeveloping tillers at six leaf stage, 3rd internode00.0069992100.0674086
CAR5Developing grain, bracts removed (5 DPA)1.152161.459741.852251.85984
CAR15Developing grain, bracts removed (15 DPA)000.03996560.101672



CDS Structure of MLOC_52270






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52270.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52270.1CUST_12893_PI427708080AvailableAvailablecontig_37410 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g56995.1 +3 8e-24 97 68/113 (60%) 13104.m11834 protein expressed protein
TAIR PP10 AT2G42180.1 +3 4e-13 67 35/66 (53%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17581133-17581633 REVERSE LENGTH=166