- Predicted Gene MLOC_5227
- Gene IDMLOC_5227
- Source Contig contig_1360356
MLOC_5227 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
There are no FPKM-by-treatment values calculated for this gene. |
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 0.417935 | 0 | 0 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
INF1 | Young developing inflorescences (5mm) | 1.07319 | 0.356791 | 0 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.757193 | 0.929017 | 2.03454 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.347015 | 0 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.333608 | 0.268287 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0 | 0.550625 | 0 | 0 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.33961 | 0.356709 | 0 | 0 |
CDS Structure of MLOC_5227
Members of Gene Cluster
This cluster has a confidence assignment of High Confidence.The gene has a transcript that is part of a cluster represented by AK360303
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK360303 | CUST_24313_PI427708080 | None | None | None |
MLOC_1524.1 | None | Available | None | contig_11350 (Mapped) |
MLOC_233.1 | None | Available | None | contig_1015798 (Not mapped) |
MLOC_27517.1 | None | Available | None | contig_1838674 (Mapped) |
MLOC_27812.1 | None | Available | None | contig_1864852 (Mapped) |
MLOC_28444.1 | None | Available | None | contig_1918442 (Not mapped) |
MLOC_28663.2 | None | Available | None | contig_1938399 (Not mapped) |
MLOC_29384.2 | None | Available | Available | contig_200035 (Not mapped) |
MLOC_33185.1 | None | Available | None | contig_2351033 (Not mapped) |
MLOC_33760.1 | None | Available | None | contig_240086 (Mapped) |
MLOC_3859.1 | None | Available | None | contig_134006 (Not mapped) |
MLOC_5227.1 | None | Available | None | contig_1360356 (Not mapped) |
MLOC_6140.1 | None | Available | None | contig_1371096 (Not mapped) |
MLOC_80678.1 | None | Available | None | contig_921203 (Not mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |