- Predicted Gene MLOC_52269
MLOC_52269 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52269_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 14.7673 | 13.8386 | 11.5142 | 13.0461 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 10.9017 | 9.827 | 20.1658 | 10.9333 |
INF1 | Young developing inflorescences (5mm) | 24.74 | 24.8071 | 23.8419 | 19.2461 |
INF2 | Developing inflorescences (1-1.5 cm) | 28.4514 | 23.9766 | 21.919 | 25.9095 |
ROO | Roots from the seedlings (10 cm shoot stage) | 15.5693 | 16.4478 | 10.1462 | 17.8663 |
NOD | Developing tillers at six leaf stage, 3rd internode | 11.6531 | 14.1028 | 24.6251 | 46.1396 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.9422 | 11.6523 | 11.0063 | 10.3369 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.57804 | 3.83787 | 3.15705 | 8.67186 |
CDS Structure of MLOC_52269
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52269.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g56980.1 |
+1 |
7e-139 |
403 |
205/250 (82%) |
13104.m05943 protein SWIB/MDM2 domain containing protein, expressed |
TAIR PP10 |
AT4G22360.1 |
+1 |
1e-61 |
205 |
106/209 (51%) |
SWIB complex BAF60b domain-containing protein | chr4:11807811-11809660 FORWARD LENGTH=385 |