MLOC_52269 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.767313.838611.514213.0461
LEAShoots from the seedlings (10 cm shoot stage)10.90179.82720.165810.9333
INF1Young developing inflorescences (5mm)24.7424.807123.841919.2461
INF2Developing inflorescences (1-1.5 cm)28.451423.976621.91925.9095
ROORoots from the seedlings (10 cm shoot stage)15.569316.447810.146217.8663
NODDeveloping tillers at six leaf stage, 3rd internode11.653114.102824.625146.1396
CAR5Developing grain, bracts removed (5 DPA)10.942211.652311.006310.3369
CAR15Developing grain, bracts removed (15 DPA)4.578043.837873.157058.67186



CDS Structure of MLOC_52269






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52269.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52269.1CUST_12892_PI427708080AvailableAvailablecontig_37410 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g56980.1 +1 7e-139 403 205/250 (82%) 13104.m05943 protein SWIB/MDM2 domain containing protein, expressed
TAIR PP10 AT4G22360.1 +1 1e-61 205 106/209 (51%) SWIB complex BAF60b domain-containing protein | chr4:11807811-11809660 FORWARD LENGTH=385