MLOC_52257 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains193.8151.903159.27180.525
LEAShoots from the seedlings (10 cm shoot stage)84.708379.152289.213275.9058
INF1Young developing inflorescences (5mm)163.401166.723178.962154.083
INF2Developing inflorescences (1-1.5 cm)125.586142.545134.67158.908
ROORoots from the seedlings (10 cm shoot stage)135.727149.676160.156196.886
NODDeveloping tillers at six leaf stage, 3rd internode130.21394.509891.6201311.202
CAR5Developing grain, bracts removed (5 DPA)127.501138.858134.665143.058
CAR15Developing grain, bracts removed (15 DPA)32.945932.466229.67581.3994



CDS Structure of MLOC_52257






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52257.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251109.1NoneNoneNoneNone
MLOC_52257.1CUST_2945_PI427708080AvailableAvailablecontig_37402 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08280.2 +2 3e-164 466 233/246 (95%) 13103.m00946 protein peptidase, T1 family, putative, expressed
TAIR PP10 AT2G05840.1 +2 5e-149 426 207/246 (84%) | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr2:2234226-2236053 FORWARD LENGTH=246