MLOC_52235 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.630434.494328.84725.0225
LEAShoots from the seedlings (10 cm shoot stage)19.193318.100715.277314.9314
INF1Young developing inflorescences (5mm)21.181921.560119.344915.8065
INF2Developing inflorescences (1-1.5 cm)13.808816.859815.170116.1134
ROORoots from the seedlings (10 cm shoot stage)6.9545215.419210.80116.7096
NODDeveloping tillers at six leaf stage, 3rd internode13.048912.28439.0614543.6908
CAR5Developing grain, bracts removed (5 DPA)17.887519.319520.689517.9356
CAR15Developing grain, bracts removed (15 DPA)3.260293.631233.602597.13853



CDS Structure of MLOC_52235






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52235.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52235.1CUST_12885_PI427708080AvailableAvailablecontig_37389 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g34080.1 -2 0.0 999 553/662 (84%) 13102.m03695 protein myosin, putative, expressed
TAIR PP10 AT5G43900.1 -2 0.0 667 385/663 (58%) | Symbols: MYA2, ATMYA2, XI-2, XI-6 | myosin 2 | chr5:17657241-17666653 REVERSE LENGTH=1505