- Predicted Gene MLOC_52219
MLOC_52219 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52219_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52219_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.22439 | 1.38537 | 0.889061 | 1.296 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 53.1885 | 106.443 | 129.881 | 96.0782 |
INF1 | Young developing inflorescences (5mm) | 1.5509 | 1.82848 | 1.31003 | 1.47399 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.39489 | 1.0737 | 1.72341 | 1.55293 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.127007 | 0.157402 | 0.520179 | 0.221557 |
NOD | Developing tillers at six leaf stage, 3rd internode | 8.52883 | 10.1444 | 17.7621 | 39.3211 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.67695 | 7.92729 | 9.54733 | 8.94104 |
CAR15 | Developing grain, bracts removed (15 DPA) | 8.30503 | 11.1129 | 7.87687 | 25.8807 |
CDS Structure of MLOC_52219
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52219.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g38950.1 |
-2 |
2e-143 |
416 |
203/270 (75%) |
13103.m04228 protein chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed |
TAIR PP10 |
AT3G15840.5 |
-2 |
4e-98 |
298 |
136/211 (64%) |
| Symbols: PIFI | post-illumination chlorophyll fluorescence increase | chr3:5356782-5358265 REVERSE LENGTH=248 |