MLOC_52219 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.224391.385370.8890611.296
LEAShoots from the seedlings (10 cm shoot stage)53.1885106.443129.88196.0782
INF1Young developing inflorescences (5mm)1.55091.828481.310031.47399
INF2Developing inflorescences (1-1.5 cm)1.394891.07371.723411.55293
ROORoots from the seedlings (10 cm shoot stage)0.1270070.1574020.5201790.221557
NODDeveloping tillers at six leaf stage, 3rd internode8.5288310.144417.762139.3211
CAR5Developing grain, bracts removed (5 DPA)4.676957.927299.547338.94104
CAR15Developing grain, bracts removed (15 DPA)8.3050311.11297.8768725.8807



CDS Structure of MLOC_52219






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52219.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248369.1NoneNoneNoneNone
MLOC_52219.1CUST_18079_PI427708080AvailableAvailablecontig_37380 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g38950.1 -2 2e-143 416 203/270 (75%) 13103.m04228 protein chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed
TAIR PP10 AT3G15840.5 -2 4e-98 298 136/211 (64%) | Symbols: PIFI | post-illumination chlorophyll fluorescence increase | chr3:5356782-5358265 REVERSE LENGTH=248