MLOC_52211 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.367314.008193.817093.26614
LEAShoots from the seedlings (10 cm shoot stage)6.39767.293358.068685.87806
INF1Young developing inflorescences (5mm)8.8510711.202114.0618.65866
INF2Developing inflorescences (1-1.5 cm)27.391817.799619.34121.9555
ROORoots from the seedlings (10 cm shoot stage)1.659956.192725.819275.98964
NODDeveloping tillers at six leaf stage, 3rd internode4.572219.5497317.11531.9115
CAR5Developing grain, bracts removed (5 DPA)11.458511.68429.26889.94831
CAR15Developing grain, bracts removed (15 DPA)5.539226.022977.4138713.1374



CDS Structure of MLOC_52211






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52211.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52211.1CUST_7377_PI427708083AvailableAvailablecontig_373750 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g34170.3 -1 3e-12 66 32/40 (80%) 13105.m03548 protein tubulin/FtsZ domain containing protein, putative, expressed
TAIR PP10 AT1G75780.1 -1 2e-12 66 32/40 (80%) | Symbols: TUB1 | tubulin beta-1 chain | chr1:28451378-28453602 REVERSE LENGTH=447