MLOC_52203 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.1307219.133417.689715.1681
LEAShoots from the seedlings (10 cm shoot stage)26.181924.499722.188420.6758
INF1Young developing inflorescences (5mm)40.823242.906740.582132.6447
INF2Developing inflorescences (1-1.5 cm)45.86248.010142.87448.356
ROORoots from the seedlings (10 cm shoot stage)7.0293414.726311.946615.9316
NODDeveloping tillers at six leaf stage, 3rd internode14.67318.916817.820464.2044
CAR5Developing grain, bracts removed (5 DPA)26.600725.039126.982424.4048
CAR15Developing grain, bracts removed (15 DPA)15.569915.004915.05331.8222



CDS Structure of MLOC_52203






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52203.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52203.1CUST_12883_PI427708080AvailableAvailablecontig_37366 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g22900.1 +2 0.0 2102 1197/1530 (78%) 13103.m02769 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT3G57300.1 +2 0.0 1471 831/1433 (58%) | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21199612-21207635 FORWARD LENGTH=1507