- Predicted Gene MLOC_52194
MLOC_52194 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52194_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52194_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 0.110459 | 0 | 0 | 0.082327 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
INF1 | Young developing inflorescences (5mm) | 0 | 0 | 0 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 0 | 0 | 0.109497 | 0.117627 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.930883 | 0 | 3.79563 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0 | 0 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.107599 | 0.0998022 | 0 | 0.12857 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.81287 | 5.76238 | 4.59953 | 16.1592 |
CDS Structure of MLOC_52194
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52194.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g29600.1 |
-3 |
7e-35 |
120 |
61/82 (74%) |
13108.m03059 protein seed maturation protein PM41, putative, expressed |
TAIR PP10 |
AT2G21820.1 |
-3 |
6e-16 |
70 |
37/79 (47%) |
unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9302983-9303219 REVERSE LENGTH=78 |