MLOC_52194 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.110459000.082327
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)000.1094970.117627
ROORoots from the seedlings (10 cm shoot stage)00.93088303.79563
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.1075990.099802200.12857
CAR15Developing grain, bracts removed (15 DPA)5.812875.762384.5995316.1592



CDS Structure of MLOC_52194






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52194.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52194.1CUST_12879_PI427708080AvailableAvailablecontig_37358 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29600.1 -3 7e-35 120 61/82 (74%) 13108.m03059 protein seed maturation protein PM41, putative, expressed
TAIR PP10 AT2G21820.1 -3 6e-16 70 37/79 (47%) unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9302983-9303219 REVERSE LENGTH=78