MLOC_52193 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8548750.2625120.183160.42728
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)00.06285300.080479
INF2Developing inflorescences (1-1.5 cm)000.1376050.220115
ROORoots from the seedlings (10 cm shoot stage)1.757876.14092.104887.32311
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.2643720.2445730.5314570.426212
CAR15Developing grain, bracts removed (15 DPA)47.030138.274648.6727119.146



CDS Structure of MLOC_52193






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52193.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364372NoneNoneNoneNone
MLOC_52193.1CUST_2941_PI427708080AvailableAvailablecontig_37358 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g16940.1 +2 1e-54 178 117/202 (58%) 13103.m02019 protein glyoxalase family protein, putative, expressed
TAIR PP10 AT1G07645.1 +2 5e-49 160 86/130 (66%) | Symbols: ATDSI-1VOC, DSI-1VOC | dessication-induced 1VOC superfamily protein | chr1:2367612-2368349 REVERSE LENGTH=137