MLOC_5217 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2018440.4205940.256130.309247
LEAShoots from the seedlings (10 cm shoot stage)0.53960.2594340.2915850.320664
INF1Young developing inflorescences (5mm)0.1150810.1565030.05238260.0916436
INF2Developing inflorescences (1-1.5 cm)0.07192620.07652530.1307780.0874188
ROORoots from the seedlings (10 cm shoot stage)0.45981.181990.7652161.22144
NODDeveloping tillers at six leaf stage, 3rd internode0.4401070.5040260.08034511.4771
CAR5Developing grain, bracts removed (5 DPA)0.1280740.07735560.07950180.0859943
CAR15Developing grain, bracts removed (15 DPA)0.015684600.02305210.0362479



CDS Structure of MLOC_5217






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5217.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5217.3CUST_12874_PI427708080AvailableAvailablecontig_136027 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g47780.1 +1 0.0 659 374/706 (53%) 13111.m04767 protein pollen signalling protein with adenylyl cyclase activity, putative, expressed
TAIR PP10 AT3G55350.1 +1 4e-63 223 128/305 (42%) PIF / Ping-Pong family of plant transposases | chr3:20518518-20520690 FORWARD LENGTH=406