MLOC_52168 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.589513.919513.17215.273
LEAShoots from the seedlings (10 cm shoot stage)9.965748.0433113.39748.15882
INF1Young developing inflorescences (5mm)13.3717.745319.713515.3358
INF2Developing inflorescences (1-1.5 cm)20.163920.055120.384123.8939
ROORoots from the seedlings (10 cm shoot stage)18.935212.939811.179314.892
NODDeveloping tillers at six leaf stage, 3rd internode10.461220.156321.088654.5831
CAR5Developing grain, bracts removed (5 DPA)15.210119.070715.290917.7893
CAR15Developing grain, bracts removed (15 DPA)5.869196.357964.6492314.989



CDS Structure of MLOC_52168






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52168.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368058NoneNoneNoneNone
MLOC_52168.2CUST_2938_PI427708080AvailableAvailablecontig_37332 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g11370.1 -2 5e-116 344 194/223 (87%) 13106.m01231 protein mediator of RNA polymerase II transcription subunit 6, putative, expressed
TAIR PP10 AT3G21350.1 -2 3e-80 251 146/224 (65%) | Symbols: MED6 | RNA polymerase transcriptional regulation mediator-related | chr3:7517106-7518587 FORWARD LENGTH=257