- Predicted Gene MLOC_52168
MLOC_52168 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 18.5895 | 13.9195 | 13.172 | 15.273 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.96574 | 8.04331 | 13.3974 | 8.15882 |
| INF1 | Young developing inflorescences (5mm) | 13.37 | 17.7453 | 19.7135 | 15.3358 |
| INF2 | Developing inflorescences (1-1.5 cm) | 20.1639 | 20.0551 | 20.3841 | 23.8939 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 18.9352 | 12.9398 | 11.1793 | 14.892 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 10.4612 | 20.1563 | 21.0886 | 54.5831 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 15.2101 | 19.0707 | 15.2909 | 17.7893 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.86919 | 6.35796 | 4.64923 | 14.989 |
CDS Structure of MLOC_52168
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52168.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g11370.1 |
-2 |
5e-116 |
344 |
194/223 (87%) |
13106.m01231 protein mediator of RNA polymerase II transcription subunit 6, putative, expressed |
| TAIR PP10 |
AT3G21350.1 |
-2 |
3e-80 |
251 |
146/224 (65%) |
| Symbols: MED6 | RNA polymerase transcriptional regulation mediator-related | chr3:7517106-7518587 FORWARD LENGTH=257 |