MLOC_52161 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.949612.452322.601712.91258
LEAShoots from the seedlings (10 cm shoot stage)0.6314880.2891150.3638380.397635
INF1Young developing inflorescences (5mm)0.02157390.024550200.0242145
INF2Developing inflorescences (1-1.5 cm)000.05733160.0871914
ROORoots from the seedlings (10 cm shoot stage)11.32337.104039.6785510.263
NODDeveloping tillers at six leaf stage, 3rd internode0.326480.8112170.1124392.27962
CAR5Developing grain, bracts removed (5 DPA)1.056291.351380.9762921.31391
CAR15Developing grain, bracts removed (15 DPA)4.560464.256812.8590411.0014



CDS Structure of MLOC_52161






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52161.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52161.1CUST_12873_PI427708080AvailableAvailablecontig_37327 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03914.1 +1 0.0 626 323/387 (83%) 13101.m00345 protein cation efflux family protein, putative, expressed
TAIR PP10 AT1G79520.1 +1 1e-169 488 257/386 (67%) Cation efflux family protein | chr1:29912369-29914515 REVERSE LENGTH=402