MLOC_52140 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.329913.955223.766383.56899
LEAShoots from the seedlings (10 cm shoot stage)44.759465.93154.43144.2861
INF1Young developing inflorescences (5mm)6.370847.451967.511185.67847
INF2Developing inflorescences (1-1.5 cm)5.568675.118255.600015.71664
ROORoots from the seedlings (10 cm shoot stage)0.4115031.5581.696531.53945
NODDeveloping tillers at six leaf stage, 3rd internode8.779095.701047.4031919.5757
CAR5Developing grain, bracts removed (5 DPA)6.786337.07436.345946.38168
CAR15Developing grain, bracts removed (15 DPA)0.9098430.7803550.8489141.88668



CDS Structure of MLOC_52140






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52140.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354030NoneNoneNoneNone
MLOC_52140.3CUST_2934_PI427708080AvailableAvailablecontig_37311 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g19760.2 -1 0.0 913 486/636 (76%) 13103.m02370 protein HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
TAIR PP10 AT1G56500.1 -1 0.0 877 455/634 (72%) haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055