MLOC_52115 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains61.86250.314454.641656.3365
LEAShoots from the seedlings (10 cm shoot stage)34.07296.6724212.267214.4388
INF1Young developing inflorescences (5mm)6.506365.661645.097225.2648
INF2Developing inflorescences (1-1.5 cm)8.3371411.309411.671512.4899
ROORoots from the seedlings (10 cm shoot stage)40.275825.43925.832631.9536
NODDeveloping tillers at six leaf stage, 3rd internode30.868341.80180.88708794.3089
CAR5Developing grain, bracts removed (5 DPA)42.896745.211743.460447.8839
CAR15Developing grain, bracts removed (15 DPA)0.372230.1322810.2707220.666156



CDS Structure of MLOC_52115






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52115.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366245NoneNoneNoneNone
MLOC_52115.1CUST_2929_PI427708080AvailableAvailablecontig_37292 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g07450.1 -2 3e-133 398 256/373 (69%) 13103.m00832 protein homeobox associated leucine zipper, putative, expressed
TAIR PP10 AT1G69780.1 -2 4e-76 246 147/277 (53%) | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294