- Predicted Gene MLOC_52112
MLOC_52112 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52112_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52112_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 24.3884 | 20.8376 | 16.7337 | 25.4974 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 13.8825 | 16.1392 | 17.5485 | 15.4485 |
INF1 | Young developing inflorescences (5mm) | 25.5678 | 23.1104 | 23.884 | 25.8681 |
INF2 | Developing inflorescences (1-1.5 cm) | 39.9593 | 31.2461 | 31.1164 | 48.6103 |
ROO | Roots from the seedlings (10 cm shoot stage) | 23.2388 | 17.5639 | 19.8031 | 27.4517 |
NOD | Developing tillers at six leaf stage, 3rd internode | 33.3386 | 32.2975 | 35.0068 | 104.255 |
CAR5 | Developing grain, bracts removed (5 DPA) | 12.6934 | 11.5406 | 10.8055 | 15.7143 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.69018 | 4.75795 | 5.05893 | 15.8136 |
CDS Structure of MLOC_52112
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52112.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g07880.1 |
-3 |
1e-32 |
124 |
64/66 (97%) |
13101.m00812 protein transcription factor HY5, putative, expressed |
TAIR PP10 |
AT5G11260.1 |
-3 |
1e-25 |
102 |
63/120 (53%) |
| Symbols: HY5, TED 5 | Basic-leucine zipper (bZIP) transcription factor family protein | chr5:3593583-3594800 REVERSE LENGTH=168 |