MLOC_52112 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.388420.837616.733725.4974
LEAShoots from the seedlings (10 cm shoot stage)13.882516.139217.548515.4485
INF1Young developing inflorescences (5mm)25.567823.110423.88425.8681
INF2Developing inflorescences (1-1.5 cm)39.959331.246131.116448.6103
ROORoots from the seedlings (10 cm shoot stage)23.238817.563919.803127.4517
NODDeveloping tillers at six leaf stage, 3rd internode33.338632.297535.0068104.255
CAR5Developing grain, bracts removed (5 DPA)12.693411.540610.805515.7143
CAR15Developing grain, bracts removed (15 DPA)5.690184.757955.0589315.8136



CDS Structure of MLOC_52112






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52112.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365648NoneNoneNoneNone
MLOC_52112.2CUST_2926_PI427708080AvailableAvailablecontig_37290 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g07880.1 -3 1e-32 124 64/66 (97%) 13101.m00812 protein transcription factor HY5, putative, expressed
TAIR PP10 AT5G11260.1 -3 1e-25 102 63/120 (53%) | Symbols: HY5, TED 5 | Basic-leucine zipper (bZIP) transcription factor family protein | chr5:3593583-3594800 REVERSE LENGTH=168