MLOC_52111 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.510337.154695.414896.98332
LEAShoots from the seedlings (10 cm shoot stage)15.243367.0202123.50554.3075
INF1Young developing inflorescences (5mm)2.987493.125463.980242.6785
INF2Developing inflorescences (1-1.5 cm)1.416372.060372.332171.98228
ROORoots from the seedlings (10 cm shoot stage)16.739116.111612.724318.1524
NODDeveloping tillers at six leaf stage, 3rd internode1.306451.527321.200574.36099
CAR5Developing grain, bracts removed (5 DPA)8.7269.554048.333358.27382
CAR15Developing grain, bracts removed (15 DPA)1.356642.28171.915254.04515



CDS Structure of MLOC_52111






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52111.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354349NoneNoneNoneNone
MLOC_52111.1CUST_261_PI427708083AvailableAvailablecontig_37290 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g07870.1 +1 1e-60 212 120/133 (90%) 13101.m00811 protein ABC transporter family protein, putative, expressed
TAIR PP10 AT3G13090.1 +1 3e-53 190 105/130 (81%) | Symbols: ATMRP8, ABCC6, MRP8 | multidrug resistance-associated protein 8 | chr3:4203013-4208171 REVERSE LENGTH=1466