MLOC_52099 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8906661.784611.549091.55927
LEAShoots from the seedlings (10 cm shoot stage)4.690732.385712.37512.83361
INF1Young developing inflorescences (5mm)2.145842.669373.183912.22753
INF2Developing inflorescences (1-1.5 cm)4.125664.384564.191074.75514
ROORoots from the seedlings (10 cm shoot stage)0.748921.310261.399711.59322
NODDeveloping tillers at six leaf stage, 3rd internode0.52671.070340.4521473.37515
CAR5Developing grain, bracts removed (5 DPA)2.360661.664131.425371.80096
CAR15Developing grain, bracts removed (15 DPA)0.8024841.059890.8235862.06211



CDS Structure of MLOC_52099






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52099.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369881NoneNoneNoneNone
MLOC_52099.2CUST_18077_PI427708080AvailableAvailablecontig_37245 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g43420.1 -1 3e-128 426 282/757 (37%) 13111.m04324 protein LZ-NBS-LRR class RGA, putative, expressed
TAIR PP10 AT3G07040.1 -1 1e-29 128 172/767 (22%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926