- Predicted Gene MLOC_52099
MLOC_52099 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52099_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52099_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.890666 | 1.78461 | 1.54909 | 1.55927 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.69073 | 2.38571 | 2.3751 | 2.83361 |
INF1 | Young developing inflorescences (5mm) | 2.14584 | 2.66937 | 3.18391 | 2.22753 |
INF2 | Developing inflorescences (1-1.5 cm) | 4.12566 | 4.38456 | 4.19107 | 4.75514 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.74892 | 1.31026 | 1.39971 | 1.59322 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.5267 | 1.07034 | 0.452147 | 3.37515 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.36066 | 1.66413 | 1.42537 | 1.80096 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.802484 | 1.05989 | 0.823586 | 2.06211 |
CDS Structure of MLOC_52099
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52099.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g43420.1 |
-1 |
3e-128 |
426 |
282/757 (37%) |
13111.m04324 protein LZ-NBS-LRR class RGA, putative, expressed |
TAIR PP10 |
AT3G07040.1 |
-1 |
1e-29 |
128 |
172/767 (22%) |
| Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |