MLOC_52097 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2156680.1856810.2473970.247511
LEAShoots from the seedlings (10 cm shoot stage)0.3405020.2844190.394920.313905
INF1Young developing inflorescences (5mm)0.4883390.7060180.6759340.648626
INF2Developing inflorescences (1-1.5 cm)0.3895880.4195160.1888820.461138
ROORoots from the seedlings (10 cm shoot stage)0.2742870.526160.5907570.688249
NODDeveloping tillers at six leaf stage, 3rd internode00.01716220.1391970.226231
CAR5Developing grain, bracts removed (5 DPA)0.5966830.6834850.638510.764153
CAR15Developing grain, bracts removed (15 DPA)0.1128210.1560410.09807950.38026



CDS Structure of MLOC_52097






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52097.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52097.1CUST_12861_PI427708080AvailableAvailablecontig_37283 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g57940.1 +3 7e-142 420 215/308 (70%) 13104.m06079 protein pentatricopeptide, putative, expressed
TAIR PP10 AT1G50270.1 +3 1e-73 244 150/392 (38%) Pentatricopeptide repeat (PPR) superfamily protein | chr1:18622044-18623834 FORWARD LENGTH=596