- Predicted Gene MLOC_52096
MLOC_52096 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 5.6657 | 10.339 | 9.68837 | 8.17739 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 10.2032 | 7.07627 | 6.65543 | 6.55942 |
INF1 | Young developing inflorescences (5mm) | 22.1273 | 24.9136 | 25.5298 | 18.4052 |
INF2 | Developing inflorescences (1-1.5 cm) | 29.8188 | 33.338 | 26.9684 | 31.1565 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.69032 | 10.4467 | 9.26923 | 10.7462 |
NOD | Developing tillers at six leaf stage, 3rd internode | 5.14474 | 7.29403 | 7.92825 | 23.5487 |
CAR5 | Developing grain, bracts removed (5 DPA) | 22.7764 | 23.1219 | 21.9294 | 20.2459 |
CAR15 | Developing grain, bracts removed (15 DPA) | 8.99333 | 8.25142 | 8.30556 | 17.9193 |
CDS Structure of MLOC_52096
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52096.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g06970.1 |
-2 |
0.0 |
1298 |
697/948 (74%) |
13107.m00674 protein HEN1, putative, expressed |
TAIR PP10 |
AT4G20910.2 |
-2 |
0.0 |
597 |
398/956 (42%) |
| Symbols: HEN1 | double-stranded RNA binding protein-related / DsRBD protein-related | chr4:11186264-11190575 REVERSE LENGTH=942 |