MLOC_52096 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.665710.3399.688378.17739
LEAShoots from the seedlings (10 cm shoot stage)10.20327.076276.655436.55942
INF1Young developing inflorescences (5mm)22.127324.913625.529818.4052
INF2Developing inflorescences (1-1.5 cm)29.818833.33826.968431.1565
ROORoots from the seedlings (10 cm shoot stage)6.6903210.44679.2692310.7462
NODDeveloping tillers at six leaf stage, 3rd internode5.144747.294037.9282523.5487
CAR5Developing grain, bracts removed (5 DPA)22.776423.121921.929420.2459
CAR15Developing grain, bracts removed (15 DPA)8.993338.251428.3055617.9193



CDS Structure of MLOC_52096






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52096.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52096.4CUST_12860_PI427708080AvailableAvailablecontig_37282 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g06970.1 -2 0.0 1298 697/948 (74%) 13107.m00674 protein HEN1, putative, expressed
TAIR PP10 AT4G20910.2 -2 0.0 597 398/956 (42%) | Symbols: HEN1 | double-stranded RNA binding protein-related / DsRBD protein-related | chr4:11186264-11190575 REVERSE LENGTH=942