MLOC_52084 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.234223.219727.091321.7969
LEAShoots from the seedlings (10 cm shoot stage)18.90819.897427.100617.0023
INF1Young developing inflorescences (5mm)16.807216.213812.480911.6814
INF2Developing inflorescences (1-1.5 cm)3.542553.679884.284943.77501
ROORoots from the seedlings (10 cm shoot stage)17.63821.284319.673422.0489
NODDeveloping tillers at six leaf stage, 3rd internode18.663315.524715.301145.5312
CAR5Developing grain, bracts removed (5 DPA)7.308126.78176.155785.99001
CAR15Developing grain, bracts removed (15 DPA)7.333586.978444.6998114.0888



CDS Structure of MLOC_52084






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52084.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363972NoneNoneNoneNone
MLOC_52084.2CUST_2924_PI427708080AvailableAvailablecontig_37276 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g43900.1 -1 0.0 608 293/321 (91%) 13107.m04615 protein protein kinase domain containing protein, expressed
TAIR PP10 AT1G14000.1 -1 0.0 675 321/408 (79%) | Symbols: VIK | VH1-interacting kinase | chr1:4797606-4800043 FORWARD LENGTH=438