MLOC_52082 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains60.765439.342.129544.9938
LEAShoots from the seedlings (10 cm shoot stage)33.45429.918940.393827.6327
INF1Young developing inflorescences (5mm)19.704421.947125.136119.082
INF2Developing inflorescences (1-1.5 cm)21.809923.284823.88326.0993
ROORoots from the seedlings (10 cm shoot stage)60.207848.059744.130456.1818
NODDeveloping tillers at six leaf stage, 3rd internode32.921542.303138.1008121.589
CAR5Developing grain, bracts removed (5 DPA)67.427369.659465.52169.9372
CAR15Developing grain, bracts removed (15 DPA)28.498327.702925.210767.3084



CDS Structure of MLOC_52082






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52082.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251308.1NoneNoneNoneNone
MLOC_52082.1CUST_2923_PI427708080AvailableAvailablecontig_37276 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g43890.1 +1 3e-111 331 168/195 (86%) 13107.m04614 protein emp24/gp25L/p24 family protein, putative, expressed
TAIR PP10 AT1G26690.1 +1 7e-75 236 120/195 (62%) emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214