MLOC_52077 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.865115.768364.914085.83243
LEAShoots from the seedlings (10 cm shoot stage)4.842160.7210070.9788631.84148
INF1Young developing inflorescences (5mm)25.423725.898626.692724.789
INF2Developing inflorescences (1-1.5 cm)51.348347.434449.241459.6149
ROORoots from the seedlings (10 cm shoot stage)1.483753.694323.200194.39927
NODDeveloping tillers at six leaf stage, 3rd internode0.0608860.1098020.1062540.336109
CAR5Developing grain, bracts removed (5 DPA)10.31389.233588.2731810.0504
CAR15Developing grain, bracts removed (15 DPA)0.8950690.3892170.9324011.84653



CDS Structure of MLOC_52077






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52077.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373177NoneNoneNoneNone
MLOC_52077.2CUST_2922_PI427708080AvailableAvailablecontig_37272 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42490.2 -1 0.0 1136 707/911 (78%) 13110.m03994 protein homeobox and START domains containing protein, putative, expressed
TAIR PP10 AT5G46880.1 -1 0.0 684 389/733 (53%) | Symbols: HB-7, HDG5 | homeobox-7 | chr5:19031540-19035388 FORWARD LENGTH=826