MLOC_5205 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.347661.224682.078221.77153
LEAShoots from the seedlings (10 cm shoot stage)4.293158.0674912.30227.02012
INF1Young developing inflorescences (5mm)1.818691.948863.238872.10586
INF2Developing inflorescences (1-1.5 cm)1.366241.165191.406681.53067
ROORoots from the seedlings (10 cm shoot stage)1.907231.29332.507041.78679
NODDeveloping tillers at six leaf stage, 3rd internode10.954112.33927.693145.9592
CAR5Developing grain, bracts removed (5 DPA)0.9751481.202171.018071.14734
CAR15Developing grain, bracts removed (15 DPA)0.3111770.3741340.4006810.933729



CDS Structure of MLOC_5205






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5205.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5205.1CUST_12854_PI427708080AvailableAvailablecontig_136007 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g24140.1 +1 1e-122 373 197/310 (64%) 13112.m02455 protein cyclin-dependent kinase G-2, putative
TAIR PP10 AT5G63370.3 +1 3e-51 187 116/313 (37%) Protein kinase superfamily protein | chr5:25384954-25386390 REVERSE LENGTH=478