MLOC_52040 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains32.075340.514636.633839.8364
LEAShoots from the seedlings (10 cm shoot stage)902.9181656.761509.381194.1
INF1Young developing inflorescences (5mm)45.684239.863443.70538.9868
INF2Developing inflorescences (1-1.5 cm)108.43337.688869.449178.4933
ROORoots from the seedlings (10 cm shoot stage)3.051736.5995516.29928.9525
NODDeveloping tillers at six leaf stage, 3rd internode309.209324.511480.2391122.79
CAR5Developing grain, bracts removed (5 DPA)172.317195.42185.241191.235
CAR15Developing grain, bracts removed (15 DPA)34.601542.419336.746693.5835



CDS Structure of MLOC_52040






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52040.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253052.1NoneNoneNoneNone
MLOC_52040.2CUST_18076_PI427708080AvailableAvailablecontig_37245 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g07020.1 +1 0.0 722 361/388 (93%) 13111.m00718 protein fructose-bisphospate aldolase isozyme, putative, expressed
TAIR PP10 AT4G38970.1 +1 0.0 639 320/398 (80%) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398