MLOC_52037 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.465321.851121.518224.6618
LEAShoots from the seedlings (10 cm shoot stage)10.74446.085116.619846.61754
INF1Young developing inflorescences (5mm)13.282516.080914.864113.6107
INF2Developing inflorescences (1-1.5 cm)11.808214.264313.71615.9979
ROORoots from the seedlings (10 cm shoot stage)17.056118.844416.673822.7413
NODDeveloping tillers at six leaf stage, 3rd internode14.553613.546911.393442.181
CAR5Developing grain, bracts removed (5 DPA)18.325920.667218.759520.9071
CAR15Developing grain, bracts removed (15 DPA)2.951692.327372.55536.69779



CDS Structure of MLOC_52037






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52037.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359644NoneNoneNoneNone
MLOC_52037.1CUST_18075_PI427708080AvailableAvailablecontig_37245 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g18220.1 +3 0.0 524 307/377 (81%) 13110.m01497 protein GHMP kinases ATP-binding protein, putative, expressed
TAIR PP10 AT5G27450.3 +3 1e-124 377 219/374 (59%) | Symbols: MK | mevalonate kinase | chr5:9691051-9692975 FORWARD LENGTH=378