MLOC_52024 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.4382.397122.476072.63959
LEAShoots from the seedlings (10 cm shoot stage)2.987362.374053.803642.68235
INF1Young developing inflorescences (5mm)3.245854.245124.611433.64343
INF2Developing inflorescences (1-1.5 cm)11.10997.092698.588689.96432
ROORoots from the seedlings (10 cm shoot stage)4.172284.739983.411115.63709
NODDeveloping tillers at six leaf stage, 3rd internode2.749025.797225.6002817.6369
CAR5Developing grain, bracts removed (5 DPA)4.087693.858274.138194.1234
CAR15Developing grain, bracts removed (15 DPA)3.277593.269812.459887.61337



CDS Structure of MLOC_52024






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52024.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366017NoneNoneNoneNone
MLOC_52024.5CUST_2915_PI427708080AvailableAvailablecontig_37235 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g31620.1 -3 0.0 798 404/572 (71%) 13111.m03065 protein OsFBL55 - F-box domain and LRR containing protein, expressed
TAIR PP10 AT3G26810.1 -3 0.0 677 338/572 (59%) | Symbols: AFB2 | auxin signaling F-box 2 | chr3:9868342-9870464 FORWARD LENGTH=575