MLOC_52017 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.305593.072692.729812.43565
LEAShoots from the seedlings (10 cm shoot stage)14.284117.142119.927612.7738
INF1Young developing inflorescences (5mm)2.923192.417491.904191.877
INF2Developing inflorescences (1-1.5 cm)1.827082.124941.709381.90329
ROORoots from the seedlings (10 cm shoot stage)0.5781930.7423770.8321670.749923
NODDeveloping tillers at six leaf stage, 3rd internode5.010934.745098.9583915.7665
CAR5Developing grain, bracts removed (5 DPA)4.808144.883944.940434.22927
CAR15Developing grain, bracts removed (15 DPA)0.3937080.3479630.4690060.800953



CDS Structure of MLOC_52017






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52017.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52017.1CUST_12847_PI427708080AvailableAvailablecontig_372300 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g31750.1 -2 2e-164 477 240/321 (75%) 13108.m03291 protein methyltransferase, putative, expressed
TAIR PP10 AT1G78140.1 -2 1e-115 350 188/317 (59%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:29401937-29403878 REVERSE LENGTH=355