MLOC_51996 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.996962.008451.921712.05053
LEAShoots from the seedlings (10 cm shoot stage)1.537293.107851.966051.60528
INF1Young developing inflorescences (5mm)0.0508483000.0468308
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)18.990110.903413.612112.2421
NODDeveloping tillers at six leaf stage, 3rd internode17.51628.5912422.135526.0072
CAR5Developing grain, bracts removed (5 DPA)9.4337110.32627.646998.38257
CAR15Developing grain, bracts removed (15 DPA)0.2227610.1025450.06427580.388268



CDS Structure of MLOC_51996






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51996.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248723.1NoneNoneNoneNone
MLOC_51996.1CUST_13502_PI427708083AvailableAvailablecontig_37214 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g02820.1 +3 5e-25 100 43/65 (66%) 13111.m00217 protein CRP10 - Cysteine-rich family protein precursor, expressed
TAIR PP10 AT5G01015.1 +3 2e-13 66 25/56 (45%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5335-5769 REVERSE LENGTH=104