MLOC_51960 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.923932.374422.580972.74786
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.05349490.05843770.2774220.117996
INF2Developing inflorescences (1-1.5 cm)0.2300190.1682920.2331710.246951
ROORoots from the seedlings (10 cm shoot stage)7.461624.932734.701987.29976
NODDeveloping tillers at six leaf stage, 3rd internode00.009556840.01915920.0384478
CAR5Developing grain, bracts removed (5 DPA)0.2080370.1669790.1579420.192974
CAR15Developing grain, bracts removed (15 DPA)0.05438560.029796800.0854668



CDS Structure of MLOC_51960






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_51960.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365447NoneNoneNoneNone
MLOC_51960.1CUST_2905_PI427708080AvailableAvailablecontig_37191 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g11780.1 +3 5e-141 412 223/330 (68%) 13106.m01278 protein MYB family transcription factor, putative
TAIR PP10 AT1G34670.1 +3 9e-91 284 133/175 (76%) | Symbols: AtMYB93, MYB93 | myb domain protein 93 | chr1:12709128-12710423 FORWARD LENGTH=365