- Predicted Gene MLOC_51947
- Gene IDMLOC_51947
- Source Contig contig_371749
MLOC_51947 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 10.6179 | 14.5552 | 11.7066 | 10.7589 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 15.5252 | 11.7082 | 14.2204 | 10.6821 |
INF1 | Young developing inflorescences (5mm) | 22.3862 | 31.8068 | 40.4349 | 20.5025 |
INF2 | Developing inflorescences (1-1.5 cm) | 42.2842 | 39.8276 | 38.1155 | 38.3073 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.242 | 11.4492 | 15.2507 | 10.698 |
NOD | Developing tillers at six leaf stage, 3rd internode | 13.5159 | 15.1327 | 17.908 | 48.1585 |
CAR5 | Developing grain, bracts removed (5 DPA) | 14.4211 | 16.8534 | 16.6876 | 13.4196 |
CAR15 | Developing grain, bracts removed (15 DPA) | 8.73619 | 9.32217 | 8.88332 | 16.7359 |
CDS Structure of MLOC_51947
![](/morexGenes/blast_net_images/MLOC_51947_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of non-High Confidence.The gene has a transcript that is part of a cluster represented by AK375595
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK375595 | None | None | None | None |
MLOC_25955.1 | None | Available | None | contig_1724250 (Not mapped) |
MLOC_26084.1 | None | Available | None | contig_1734180 (Not mapped) |
MLOC_27249.1 | None | Available | None | contig_1816770 (Not mapped) |
MLOC_27778.1 | None | Available | None | contig_1862097 (Not mapped) |
MLOC_29259.1 | None | Available | None | contig_1988447 (Not mapped) |
MLOC_30532.1 | None | Available | None | contig_2105795 (Not mapped) |
MLOC_30962.1 | None | Available | None | contig_2143837 (Not mapped) |
MLOC_35046.1 | None | Available | None | contig_2454064 (Not mapped) |
MLOC_362.1 | None | Available | None | contig_1025514 (Not mapped) |
MLOC_42577.1 | None | Available | None | contig_265229 (Mapped) |
MLOC_42770.1 | None | Available | None | contig_2661814 (Not mapped) |
MLOC_42787.1 | None | Available | None | contig_2662653 (Not mapped) |
MLOC_509.1 | None | Available | None | contig_1035800 (Not mapped) |
MLOC_51947.1 | None | Available | Available | contig_371749 (Mapped) |
MLOC_58986.1 | None | Available | None | contig_431788 (Not mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |